GenePattern [10], like Gaggle and Firegoose, runs within a web browser but also can be downloaded and run locally. Originally created for gene expression analysis, GenePattern also enables single nucleotide polymorphism and proteomics analysis. GenePattern provides fixed workflows that encapsulate analyses processes and allows the development of user-created workflows. GenePattern processes are oriented towards capturing detailed and possibly large-scale computational analysis rather than initial exploration, knowledge discovery, and evaluation of data.
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The Sidekick architecture is extensible, providing an opportunity for integration of new services at the user level. A data source must make its data available through a web service, placing the burden of keeping the data up-to-date on the source itself. The Sidekick web server stages data files that must be downloaded, providing an interface for Sidekick clients. Some analyses are performed on the server, while other analyses are performed on the client, taking advantage of Flex's client-side object-oriented support.
Provenance and version tracking are incorporated into Sidekick to facilitate repetition of experiments and evaluation of data quality. Given the rate which data is updated, a key aspect to Sidekick's strength is ensuring up-to-date data at the time of downloads. Within Sidekick, provenance information is included in the saved workflows and results. 2ff7e9595c
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